Journal of Computational Intelligence in Bioinformatics

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Receptor Interactions of Transpeptidase Involved in Peptidoglycan Biosynthesis


Affiliations
1 Department of Bioinformatics, Marudu pandiyar College, Thanjavur
2 Department of Botany and Microbiology, A.V.V.M Sri Pushpam College, Thanjavur.
     

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Analyse the various docking modes of peptidoglycan formation and inhibition is by selecting the test sets from PDB. These test sets were docked by Hex and the resulting docking complex submitted to Spdbv. Distance of the residues in three different states viz. interface area, contact surface area and near native area. The results revealed that ARG 642 (1.33 Å) is found to be the best fit for peptidoglycan formation, GLN 422 (1.45 Å) and TYR 423 (2.15Å) are found to be the best fit for peptidoglycan inhibition using penicillin G and penicillin V respectively. Based on our study it is concluded that penicillin G has the best interacting activity as compared to penicillin V.

Keywords

Docking, Peptidoglycan, Penicillin, Interactions
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  • Receptor Interactions of Transpeptidase Involved in Peptidoglycan Biosynthesis

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Authors

A. Brindha Devi
Department of Bioinformatics, Marudu pandiyar College, Thanjavur
R. Chandrasekaran
Department of Botany and Microbiology, A.V.V.M Sri Pushpam College, Thanjavur.

Abstract


Analyse the various docking modes of peptidoglycan formation and inhibition is by selecting the test sets from PDB. These test sets were docked by Hex and the resulting docking complex submitted to Spdbv. Distance of the residues in three different states viz. interface area, contact surface area and near native area. The results revealed that ARG 642 (1.33 Å) is found to be the best fit for peptidoglycan formation, GLN 422 (1.45 Å) and TYR 423 (2.15Å) are found to be the best fit for peptidoglycan inhibition using penicillin G and penicillin V respectively. Based on our study it is concluded that penicillin G has the best interacting activity as compared to penicillin V.

Keywords


Docking, Peptidoglycan, Penicillin, Interactions

References