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Application of Artificial Neural Network for Prediction of Retention Time for some Pesticides in Liquid Chromatography


Affiliations
1 Young Researchers Club, Branch Dehdasht, Islamic Azad University, Dehdasht, Iran, Islamic Republic of
 

The quantitative structure-retention relationships (QSRR) method is employed to predict the retention times (RTs) of pesticides by molecular descriptors which were calculated by Dragon software. After the calculation molecular descriptors for all molecules, a suitable set of molecular descriptors were selected by using genetic algorithm (GA) and then the data set was randomly divided into training and prediction set. The selected five descriptors were used to build QSRR models with multi-linear regression (MLR) and generalized regression neural network (GRNN) which were built and optimized with intelligent problem solver (IPS) in Statistica 7.1software. Both linear and nonlinear models show good predictive ability, of which GRNN model demonstrated a better performance than that of the MLR model. The ischolar_main mean square error of cross validation (RMSECV) of the training and the prediction set for the GRNN model was 1.345 and 2.810, and the correlation coefficients (R) were 0.955 and 0.927 respectively, while the square correlation coefficient of the cross validation (Q2 loo)Q2loo on the GRNN model was 0.951, revealing the reliability of this model. The resulting data indicated that GRNN could be used as a powerful modeling tool for the QSRR studies.

Keywords

Pesticides, Quantitative Structure-retention Relationship, Genetic Algorithm, Multiple Linear Regression, Retention Time, Artificial Neural Networks
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  • Acevedo-Martýnez J, Escalona-Arranz JC, Villar- Rojas A, Tellez-Palmero F, Perez-Roses R, Gonzalez L and Carrasco-Velar R (2006) Quantitative study of the structure–retention index relationship in the imine family. J. Chromatogr. A 1102, 238-251.
  • Ahmad S and Gromiha M M (2003) Design and training of a neural network for predicting the solvent accessibility of proteins. J. Comput. Chem. 24, 1313- 1320.
  • Aires-de-Sousa J, Hemmer MC and Gasteiger J (2002) Prediction of 1H NMR Chemical shifts using neural networks. Anal. Chem. 74, 80-90.
  • Bodzioch K, Durand A, Kaliszan R, Baczek T and Vander Heyden Y (2010) Advanced QSRR modeling of peptides behavior in RPLC. Talanta. 81, 1711-1718.
  • Booth TD, Azzaoui K and Wainer IW (1997) Prediction of chiral chromatographic separations using combined multivariate Regression and Neural Network. Anal. Chem. 69, 3879-3883.
  • Consonni V, Todeschini R and Pavan M (2002) Structure/Response correlations and similarity/diversity analysis by GETAWAY descriptors. 1. Theory of the novel 3D molecular descriptors. J.Chem. Inf. Comput. Sci. 42, 682.
  • Fatemi MH (2002) Simultaneous modeling of the Kovats retention indices on OV-1 and SE-54 stationary phases using artificial neural networks. J. Chromatogr. A 955, 273-280.
  • Fatemi MH, Baher E and Ghorbanzade'h M (2009) Predictions of chromatographic retention indices of alkylphenols with support vector machines and multiple linear regression. J. Sep. Sci. 32, 4133-4142.
  • Fausett L (1994) Fundamentals of neural networks, Prentice Hall, NY.
  • Flieger J, Swieboda R and Tatarczak M (2007) Chemometric analysis of retention data from saltingout thin-layer chromatography in relation to structural parameters and biological activity of chosen sulphonamides. J. Chromatogr. B 846, 334-340.
  • Fragkaki AG, Koupparis MA and Georgakopoulos CG (2004) Quantitative structure–retention relationship study of α-,β1-, and β2-agonists using multiple linear regression and partial least-squares procedures. Anal.Chim. Acta. 512, 165-171.
  • Goldberg DE (1989) Genetic algorithms in search, Optimisation and machine learning. Addison-Wesley, Massachusetts, MA.
  • Guo W, Lu Y and Zheng XM (2000) The predicting study for chromatographic retention index of saturated alcohols by MLR and ANN. Talanta 51, 479-488.
  • Heberger K (2007) Quantitative structure– (chromatographic) retention relationships. J. Chromatogr. A1158, 273-305.
  • Hogendoorn E and Van Zoonen P (2000) Recent and future developments of liquid chromatography in pesticide trace analysis. J. Chromatogr. A 892, 435-453.
  • Huertas-Perez JF and Garcia-Campana AM (2008) Determination of N-methylcarbamate pesticides in water and vegetable samples by HPLC with postcolumn chemiluminescence detection using the luminol reaction. Anal. Chim. Acta. 630, 194-204.
  • Jalali-Heravi M and Garkani-Nejad Z (1993) Prediction of gas chromatographic retention indices of some benzene derivatives. J. Chromatogr. A 648, 389-393.
  • Kaliszan R (1997) Structure and Retention in Chromatography. A chemometric approach, Harwood Academic Publishers, Amsterdam.
  • Kaliszan R (2007) QSRR: Quantitative structure- (Chromatographic) retention relationships. Chem. Rev. 107, 3212-3246.
  • Katritzky AR, Chen K, Maran U and Carlson DA (2000) QSPR Correlation and Predictions of GC Retention Indexes for Methyl-Branched HydrocarbonsProduced by Insects. Anal. Chem. 72, 101-109.
  • Khodadoust S and Hadjmohammadi MR (2011) Determination of N-methylcarbamate insecticides in water samples using dispersive liquid–liquid microextraction and HPLC with the aid of experimental design and desirability function. Anal. Chim. Acta. 699, 113-119.
  • Kuster M, Alda ML and Barcelo D (2006) Analysis of pesticides in water by liquid chromatography-tandem mass spectrometric techniques. Mass Spectrom. Ver. 25, 900-916.
  • Lambropoulou DA and Albanis TA (2007) Liquidphase micro-extraction techniques in pesticide residue analysis. J. Biochem. Biophys. Methods. 70, 195-228.
  • Lang B (2005) Monotonic multi layer perceptron networks as universal approximators. In: W. (Eds.), Formal Models and Their Applications. Intl. Conf. Artificial Neural Networks, 2005, Lecture Notes in Comput. Sci., 3697, Springer, Berlin. pp. 31.
  • Leardi R, Boggia R and Terrible M (1992) Genetic algorithms as a strategy for feature selection. J. Chemom. 6, 267-281.
  • Luan F, Xue C X, Zhang R S, Zhao C Y, Liu M C, Hu Z D and Fan B T (2005) Prediction of retention time of a variety of volatile organic compounds based on the heuristic method and support vector machine. Anal. Chim. Acta 537, 101-110.
  • Marengo E, Gennaro MC and Angelino SJ (1998) Neural network and experimental design to investigate the effect of five factors in ion-interaction highperformance liquid chromatography. J. Chromatogr. A 789, 47-55.
  • Massart DL, Vandeginste BGM, Buydens LMC, Jong SDE, Leui PJ, Smeyers-Verbeke J (1997) Handbook of chemometrics and qualimetrics: Part A, Elsevier, Netherlands.
  • Metting HJ and Coenegracht PMJ (1996) Neural networks in high-performance liquid chromatography optimization: response surface modeling. J. Chromatogr. A 728, 47-53.
  • Neter J, Wasserman W, Kutner M (1995) Applied linear statistical models, 3rd edn, Irwin, Homewood.
  • Pang GF, Liu YM, Fan CL, Zhang JJ, Cao YZ, Li XM, Li ZY, Wu YP and Guo TT (2006) Simultaneous determination of 405 pesticide residues in grain by accelerated solvent extraction then gas chromatography-mass spectrometry or liquid chromatography-tandem mass spectrometry. Anal. Bioanal. Chem. 384, 1366-1408.
  • Qin LT, Liu SS, Liu HL and Tong J (2009) Comparative multiple quantitative structure–retention relationships modeling of gas chromatographic retention time of essential oils using multiple linear regression, principal component regression, and partial least squares techniques. J. Chromatogr. A 1216, 5302-5312.
  • Riahi S, Ganjali MR, Pourbasheer E and Norouzi P (2008) QSRR Study of GC Retention Indices of essential-oil compounds by multiple linear regression with a genetic algorithm. Chromatographia. 67, 917- 922.
  • Riahi S, Pourbasheer E, Ganjali MR and Norouzi P (2009) Investigation of different linear and nonlinear chemometric methods for modeling of retention index of essential oil components: Concerns to support vector machine. J. Hazard. Mater. 166, 853-859.
  • Rodrigues AM, Ferreira V, Cardoso VV, Ferreira E and Benoliel MJ (2007) Determination of several pesticides in water by solid-phase extraction, liquid chromatography and electrospray tandem massspectrometry. J. Chromatogr. A 1150, 267-278.
  • Santalad A, Srijaranai S, Burakham R, Glennon JD and Deming RL (2009) Cloud-point extraction and reversed-phase high-performance liquid chromatography for the determination of carbamate insecticide residues in fruits. Anal. Bioanal. Chem.394, 1307-1317.
  • Saraji M and Esteki N (2008) Analysis of carbamate pesticides in water samples using single-drop microextraction and gas chromatography–mass spectrometry. Anal. Bioanal. Chem. 391, 1091-1100.
  • Schuur JH, Selzer P and Gasteiger J (1996) The Coding of the three-dimensional structure of molecules by molecular transforms and Its application to structure-spectra correlations and studies ofbiological activity. J. Chem. Inf. Comput. Sci. 36, 334- 344.
  • Schuur JH and Gasteiger J (1997) Infrared spectra simulation of substituted benzene derivatives on the basis of a 3D Structure Representation. Anal. Chem. 69, 2398-2405.
  • Siripatrawan U and Harte BR (2007) Solid phase microextraction/gas chromatography/mass spectrometry integrated with chemometrics for detection of Salmonella typhimurium contamination in a packaged fresh vegetable. Anal. Chim. Acta. 581, 63-70.
  • StatSoft (2006) Inc. STATISTICA (data analysis software system), version 7.1. http:// www.statsoft.com.
  • Todeschini R and Consonni V (2000) Handbook of Molecular Descriptors, Wiley-VCH, Weinheim.
  • Van der Hoft GR and van Zoonen P (1999) Trace analysis of pesticides by gas chromatography. J. Chromatogr. A 843, 301-322.
  • Waller CL and Bradley MP (1999) Development and validation of a novel variable selection technique with application to multidimensional quantitative structure−Activity relationship studies. J. Chem. Inf.Comput. Sci. 39, 345-355.
  • Wang S, Mu H, Bai Y, Zhang Y and Liu H (2009) Multiresidue determination of fluoroquinolones, organophosphorus and N-methyl carbamates simultaneously in porcine tissue using MSPD and HPLC–DAD. J. Chromatogr. B. 877, 2961-2966.
  • Xia BB, Ma WP, Zhang XY and Fan BT (2007) Quantitative structure–retention relationships for organic pollutants in biopartitioning micellar chromatography. Anal. Chim. Acta. 598, 12-18.
  • Xu L, Krzyzak A and Yuille AL (1994) Neural Networks. 7, 609-628.
  • Zupan J and Gasteiger J (1999) Neural networks in chemistry and Drug design, Wiley-VCH Verlag, Weinheim.

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  • Application of Artificial Neural Network for Prediction of Retention Time for some Pesticides in Liquid Chromatography

Abstract Views: 471  |  PDF Views: 112

Authors

Saeid Khodadoust
Young Researchers Club, Branch Dehdasht, Islamic Azad University, Dehdasht, Iran, Islamic Republic of

Abstract


The quantitative structure-retention relationships (QSRR) method is employed to predict the retention times (RTs) of pesticides by molecular descriptors which were calculated by Dragon software. After the calculation molecular descriptors for all molecules, a suitable set of molecular descriptors were selected by using genetic algorithm (GA) and then the data set was randomly divided into training and prediction set. The selected five descriptors were used to build QSRR models with multi-linear regression (MLR) and generalized regression neural network (GRNN) which were built and optimized with intelligent problem solver (IPS) in Statistica 7.1software. Both linear and nonlinear models show good predictive ability, of which GRNN model demonstrated a better performance than that of the MLR model. The ischolar_main mean square error of cross validation (RMSECV) of the training and the prediction set for the GRNN model was 1.345 and 2.810, and the correlation coefficients (R) were 0.955 and 0.927 respectively, while the square correlation coefficient of the cross validation (Q2 loo)Q2loo on the GRNN model was 0.951, revealing the reliability of this model. The resulting data indicated that GRNN could be used as a powerful modeling tool for the QSRR studies.

Keywords


Pesticides, Quantitative Structure-retention Relationship, Genetic Algorithm, Multiple Linear Regression, Retention Time, Artificial Neural Networks

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DOI: https://doi.org/10.17485/ijst%2F2012%2Fv5i2%2F30331