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Designing of CHK1 Inhibitors by 3d-QSAR, Virtual Screening and Induced Fit Docking Studies


Affiliations
1 CSIR Unit for Research and Development of Information Products, ‘Tapovan’, NCL Campus, S. No. 113, 114, Pashan, Pune 411 008, India
2 Department of Chemistry, Jamia Hamdard, Hamdard Nagar, New Delhi 110 062, India
 

Checkpoint kinase 1 (CHK1) is an attractive therapeutic target for cancer treatment as CHK1 is a key mediator in the DNA damage-induced checkpoint network. The structure-based drug design approach was used to achieve this objective which includes the 3D-QSAR studies, where a series of selenophene derivatives to investigate the structural requirements of their inhibitory activity against CHK1 was used for the development of the model. The generated model was precise with r2 = 0.95 and q2 = 0.68. Furthermore, the study involves the use of structure-based virtual screening of specs database and induced fit docking docking studies to retrieve potential CHK1 inhibitors.

Keywords

Checkpoint kinase 1, Induced Fit Docking, Virtual Screening, Toxicity Prediction.
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  • Xiao, Z., Xue, J., Sowin, T. J. and Zhang, H., Differential roles of checkpoint kinase 1, checkpoint kinase 2, and mitogen-activated protein kinase-activated protein kinase 2 in mediating DNA damage-induced cell cycle arrest: implications for cancer therapy. Mol. Cancer Ther., 2006, 8, 1935–1943.
  • Sanchez, Y., Wong, C., Thoma, R. S., Richman, R., Wu, Z., Piwnica-Worms, H. and Elledge, S. J., Conservation of the Chk1 checkpoint pathway in mammals: linkage of DNA damage to Cdk regulation through Cdc25. Science, 1997, 277, 1497–1501.
  • Chen, P. et al., The 1.7 Å crystal structure of human cell cycle checkpoint kinase Chk 1: implications for Chk1 regulation. Cell, 2000, 100, 681–692.
  • Bryant, C., Scriven, K. and Massey, A. Inhibition of the checkpoint kinase Chk1 induces DNA damage and cell death in human leukemia and lymphoma cells. Mol. Cancer, 2014, 13, 147.
  • Hartwell, L. H. and Weinert, T. A., Checkpoints: controls that ensure the order of cell cycle events. Science, 1989, 246, 629– 634.
  • Zhou, B. B. and Elledge, S. J., The DNA damage response: putting checkpoints in perspective. Nature, 2000, 408, 433–439.
  • McNeely, S. et al., Chk1 inhibition after replicative stress and DNA-dependent protein kinase. Cell Cycle, 2010, 9, 995–1004.
  • Scorah, J. and McGowan, C. H., Claspin and Chk1 regulate replication fork stability by different mechanisms. Cell Cycle, 2009, 8, 1036–1043.
  • Petermann, E., Woodcock, M. and Helleday, T., Chk1 promotes replication fork progression by controlling replication initiation. Proc. Natl. Acad. Sci. USA, 2010, 107, 16090–16105.
  • Bahassi, E. M., Ovesen, J. L., Riesenberg, A. L., Bernstein, W. Z., Hasty, P. E. and Stambrook, P. J., The checkpoint kinases Chk1 and Chk2 regulate the functional associations between hBRCA2 and Rad51 in response to DNA damage. Oncogene, 2008, 27, 3977–3985.
  • Davies, K. D. et al., Single-agent inhibition of Chk1 is antiproliferative in human cancer cell lines in vitro and inhibits tumor xenograft growth in vivo. Oncol Res., 2011, 19, 349–363.
  • Cole, K. A. et al., RNAi screen of the protein kinome identifies checkpoint kinase 1 (CHK1) as a therapeutic target in neuroblastoma. Proc. Natl. Acad. Sci. USA, 2011, 108, 3336– 3341.
  • Dai, Y. and Grant, S., New insights into checkpoint kinase 1 in the DNA damage response signaling network. Clin. Cancer Res., 2010, 16, 376–383.
  • Zabludoff, S. D. et al., AZD7762, a novel checkpoint kinase inhibitor, drives checkpoint abrogation and potentiates DNAtargeted therapies. Mol. Cancer Ther., 2008, 9, 2955–2966.
  • Ashwell, S., Janetka, J. W. and Zabludoff, S., Keeping checkpoint kinases in line: new selective inhibitors in clinical trials. Expert Opin. Invest. Drugs, 2008, 17, 1331–1340.
  • Daud, A. et al., A phase I dose-escalation study of SCH 900776, a selective inhibitor of checkpoint kinase 1 (CHK1), in combination with gemcitabine (Gem) in subjects with advanced solid tumors. J. Clin. Oncol., 2010, 28, abstract number 3064.
  • Hong, P.-C., et al., Synthesis of selenophene derivatives as novel CHK1 inhibitors. Bioorg. Med. Chem. Lett., 2010, 20, 5065–5068.
  • Kolossvary, I. and Guida, W. C., Low mode search: an efficient, automated computational method for conformational analysis application to cyclic and acyclic alkanes and cyclic peptides. J. Am. Chem. Soc., 1996, 118, 5011–5019.
  • Sherman, W., Day, T., Jacobson, M. P., Friesner, R. A. and Farid, R., Novel procedure for modeling ligand/receptor induced fit effects. J. Med. Chem., 2006, 49, 534–553.
  • Sherman, W., Beard, H. S. and Farid, R., Use of an induced fit receptor structure in virtual screening. Chem. Biol. Drug Des., 2006, 67, 83–84.
  • Merchant, C.A., Briggs, K. A. and Long, A., In silico tools for sharing data and knowledge on toxicity and metabolism: derek for windows, meteor, and vatic. Toxicol. Mech. Methods, 2008, 18, 177–187.

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  • Designing of CHK1 Inhibitors by 3d-QSAR, Virtual Screening and Induced Fit Docking Studies

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Authors

Sayalee Chavan
CSIR Unit for Research and Development of Information Products, ‘Tapovan’, NCL Campus, S. No. 113, 114, Pashan, Pune 411 008, India
Rajkumar Hirwani
CSIR Unit for Research and Development of Information Products, ‘Tapovan’, NCL Campus, S. No. 113, 114, Pashan, Pune 411 008, India
M. Sarwar Alam
Department of Chemistry, Jamia Hamdard, Hamdard Nagar, New Delhi 110 062, India
Nikhil Vidyasagar
CSIR Unit for Research and Development of Information Products, ‘Tapovan’, NCL Campus, S. No. 113, 114, Pashan, Pune 411 008, India
Radhacharan Dash
CSIR Unit for Research and Development of Information Products, ‘Tapovan’, NCL Campus, S. No. 113, 114, Pashan, Pune 411 008, India
Veena Deshpande
CSIR Unit for Research and Development of Information Products, ‘Tapovan’, NCL Campus, S. No. 113, 114, Pashan, Pune 411 008, India

Abstract


Checkpoint kinase 1 (CHK1) is an attractive therapeutic target for cancer treatment as CHK1 is a key mediator in the DNA damage-induced checkpoint network. The structure-based drug design approach was used to achieve this objective which includes the 3D-QSAR studies, where a series of selenophene derivatives to investigate the structural requirements of their inhibitory activity against CHK1 was used for the development of the model. The generated model was precise with r2 = 0.95 and q2 = 0.68. Furthermore, the study involves the use of structure-based virtual screening of specs database and induced fit docking docking studies to retrieve potential CHK1 inhibitors.

Keywords


Checkpoint kinase 1, Induced Fit Docking, Virtual Screening, Toxicity Prediction.

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DOI: https://doi.org/10.18520/cs%2Fv109%2Fi12%2F2271-2277