Open Access
Subscription Access
Open Access
Subscription Access
Insights into Rhizospheric Bacterial Abundance of Bruguiera gymnorhiza (l.) LAM. from the Indian Sunderbans
Subscribe/Renew Journal
The sturdiness of mangrove plants, such as Bruguiera gymnorhiza (L.) Lam, has been related to their inherent physiological resistance and beneficial interactions with associated and specific microbial communities. Development in metagenomics provides a more complete picture of rhizosphere microbiome. In this work we analysed bacterial community of ischolar_main rhizosphere of B. gymnorhiza using 16s rRNA metagenome next generation sequencing (Oxford Nanopore minion platfrom) and found Candidatus, Ectothiorhodospira, Holophaga, Nitrospira, Pelagibius, Sulfitobacter, Thioalkalivibrio, Vicinamibacter, Woeseia to be most abundant genera, which provides a new insight into the functional and microbial diversity of the rhizospheric assemblage of the plant under study.
Keywords
- Bulgarelli, D., Rott, M., Schlaeppi, K., Van Themaat, E. V. L., Ahmadinejad, N., Assenza, F., Rauf, P., Huettel, B., Reinhardt, R., Schmelzer, E., Peplies, J., Gloeckner, F. O., Amann, R., Eickhorst, T. and Schulze-Lefert, P. 2012. Revealing structure and assembly cues for Arabidopsis ischolar_main-inhabiting bacterial microbiota. Nature., 488: 91-95.
- Calvaruso, C., Mareschal, L., Turpault, L. M. M-P. and Leclerc, E. 2009. Rapid clay weathering in the rhizosphere of Norway spruce and oak in an acid forest ecosystem. Soil. Sci. Soc. Am. J., 73(1): 331-338.
- DeAngelis, K. M., Brodie, E. L., DeSantis, T. Z., Andersen, G. L., Lindow, S. E. and Firestone, M. K. 2008. Selective progressive response of soil microbial community to wild oat ischolar_mains. ISME J., 3(2): 168-178.
- Dumbrell, A. J., Nelson, M., Helgason, T., Dytham, C. and Fitter, A. H. 2010. Relative roles of niche and neutral processes in structuring a soil microbial community. ISME J., 4(3): 337-345. https://store.nanoporetech.com/media/wysiwyg/Example_Direct_cDNA_Sequencing_ protocol.pdf.
- Jager, J. and Looman, C. 1995. Data collection. In: R. H. G. Jongman, C. J. F. T. Braak and O. F. R. V. Tongreren (eds.), Data Analysis in Community and Landscape Ecology. Cambridge University Press, Cambridge, pp. 10-28.
- Knief, C., Delmotte, N., Chaffron, S., Stark, M., Innerebner, G., Wassmann, R., Mering C. V. and Vorholt, J. A. 2012. Metaproteogenomic analysis of microbial communities in the phyllosphere and rhizosphere of rice. ISME J., 6(7): 1378-1390.
- Mendes, R., Garbeva, P. and Raaijmakers, J. M. 2013. The rhizosphere microbiome: significance of plant beneficial, plant pathogenic, and human pathogenic microorganisms. FEMS Microbiol., Rev., 37(5): 634-663.
- Philippot, L., Raaijmakers, J. M., Lemanceau, P. and van der Putten, W. H. 2013. Going back to the ischolar_mains: the microbial ecology of the rhizosphere. Nat. Rev. Microbiol., 11(11): 789-799.
- Rasche, F., Hödl, V., Poll, C., Kandeler, E., Gerzabek, M. H., Van Elsas, J. D. and Sessitsch, A. 2006. Rhizosphere bacteria affected by transgenic potatoes with antibacterial activities compared with the effects of soil, wild-type potatoes, vegetation stage and pathogen exposure. FEMS Microbiol. Ecol., 56(2): 219-235.
- Robin, A., Mougel, C., Siblot, S., Vansuyt, G., Mazurier, S. and Lemanceau, P. 2006. Effect of ferritin over-expression in tobacco on the structure of bacterial and pseudomonas communities associated with the ischolar_mains. FEMS Microbiol. Ecol., 58(3): 492-502.
- Uroz, S., Buee, M., Murat, C., Frey-Klett, P. and Martin, F. 2010. Pyrosequencing reveals a contrasted bacterial diversity between oak rhizosphere and surrounding soil. Environ. Microbiol. Rep., 2(2): 281-288.
- Xu, Y., Wang, G., Jin, J., Liu, J., Zhang, Q. and Liu, X. 2009. Bacterial communities in soybean rhizosphere in response to soil type, soybean genotype, and their growth stage. Soil Biol. Biochem., 41(5): 919-925.
Abstract Views: 274
PDF Views: 2