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MAGIC:A Magical Genetic Resource for Multiple Trait Enhancements in Rice


Affiliations
1 Department of Plant Breeding and Genetics, Jawaharlal Nehru Krishi VishwaVidyalaya, Jabalpur (M.P.), India
2 College of Agriculture (J.N.K.V.V.), Balaghat (M.P.), India
     

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MAGIC is the multi-parent advanced generation inter-cross. It is a simple extension of the advance inter cross. The MAGIC is an alternative resource for the genetic dissection of complex traits. The development of MAGIC population initiated by using the two major ecotypes: indica and japonica. Japonica rice grains are short, roundish, spikelet’s are awnless to long awned and having 0- 20 per cent amylose content in grain. Whereas counterpart indica rice grains are long to short selender grain, awnless spikelets and 23-31 per cent amylose content observed in grain. In rice, developed 4 multi-parent populations: indica MAGIC (8 indica parents); MAGIC plus (8 indica parents with two additional rounds of 8-way F1 inter-crossing); japonica MAGIC (8 japonica parents); and Global MAGIC (16 parents – 8 indica and 8 japonica). The parents used in creating these populations are improved varieties with desirable traits for biotic and abiotic stress tolerance, yield and grain quality. The purpose is to fine map QTLs for multiple traits and to directly and indirectly use the highly recombined lines in breeding programmes.

Keywords

MAGIC (Multi Parent Advanced Generation Inter Cross) , QTL Mapping, Mapping Population.
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  • Allard, R. (1960). Breeding methods with self-pollinated crops. Principles of Breeding. John Wiley and Sons. Inc., New York

  • Bandillo, N., Raghavan, C., Muyco, P.A., Sevilla, M.A.L., Lobina, I.T., Dilla Ermita, C.J., Tung, C.W., McCouch, S., Thomson, M., Mauleon, R., Singh, R.K., Gregorio, G., Redo~na, E. and Leung, H. (2013). Multi-parent advanced generation inter-cross (MAGIC) populations in rice: progress and potential for genetics research and breeding. Rice, 6 (1):11–15. doi: 10.1186/1939-8433-6-11.

  • Cavanagh, C., Morell, M., Mackay, I. and Powell, W. (2008). From mutations to MAGIC: resources for gene discovery, validation and delivery in crop plants. Curr. Opinion Plant Biol., 11(2) : 215–221. doi: 10.1016/j.pbi.2008.01.002.

  • Dell’Acqua M., Gatti D. M. and Pea, G., Federica, Cattonaro, Frederik, Coppens, Gabriele, Magris, Aye, L. Hlaing, Htay H. Aung, Hilde, Nelissen, Joke, Baute, Elisabetta, Frascaroli, Gary, A. Churchill, Dirk Inzé, Michele, Morgante Mario and Enrico Pe (2015). Genetic properties of the MAGIC maize population: a new platform for high definition QTL mapping in Zea mays. Genome Biol., 16: 167. doi: 10.1186/s13059-015-0716-z.

  • Gaur, P.M., Jukanti, A.K. and Varshney, R.K. (2012). Impact of genomic technologies on chickpea breeding strategies. Agronomy, 2 : 199–221.https://doi.org/10.3390/agronomy 2030199.

  • Higgins, R.H., Thurber, C.S., Assaranurak, I. and Brown, P.J. (2014). Multiparental mapping of plant height and flowering time QTL in partially isogenic sorghum families G3 (Bethesda), 4 (9): 1593–1602.doi: 10.1534/g3.114.013318.

  • Huang, B.E., George, A.W., Forrest, K.L., Kilian, A., Hayden, M.J. and Morell. M.K. (2012). A multiparent advanced generation inter-cross population for genetic analysis in wheat. Plant Biotechnol, J.,10: 826–839. Doi: 10.1111/j.1467-7652. 2012.0070.2x.

  • Huang B.E., Verbyla K.L., Verbyla A.P., Raghavan C., Singh V.K., Gaur P., Leung H., Varshney R.K. and Cavanagh C.R. (2015). MAGIC populations in crops: current status and future prospects. Theor. Appl. Genet., 128 (6): 999–1017.doi: 10.1007/ s00122-015-2506-0. Epub 2015 Apr 9.

  • Huang, X., Wei, X., Sang, T., Zhao, Q., Feng, Q., Zhao, Y., Li, C., Zhu, C., Lu, T., Zhang, Z., Li, M., Fan, D., Guo, Y., Wang, A., Wang, L., Deng, L., Li, W., Lu, Y., Weng, Q., Liu, K., Huang, T., Zhou, T., Jing, Y., Li, W., Lin, Z., Buckler, E.S., Qian, Q., Zhang, Q.F., Li, J. and Han, B. (2010). Genome-wide association studies of 14 agronomic traits in rice landraces. Nat Genet.,42 (11) : 961-967. doi: 10.1038/ng.695. Epub 2010 Oct 24.

  • Huang, X., Kurata, N., Wei, X., Wang, Z.X., Wang, A., Zhao, Q., Zhao, Y., Liu, K., Lu, H., Li, W., Guo, Y., Lu, Y., Zhou, C., Fan, D., Weng, Q., Zhu, C., Huang, T., Zhang, L., Wang, Y., Feng, L., Furuumi, H., Kubo, T., Miyabayashi, T., Yuan, X., Xu, Q., Dong, G., Zhan, Q., Li, C., Fujiyama, A., Toyoda, A., Lu, T., Feng, Q., Qian, Q., Li, J. and Han, B. (2012). A map of rice genome variation reveals the origin of cultivated rice. Nature., 490 (7421): 497501. doi: 10.1038/nature11532. Epub 2012 Oct 3.

  • Jensen, N.F. (1970). A diallel selective mating system for cereal breeding.Crop Sci., 10 (6) : 629–635. doi: 10.2135/cropsci1970.0011183X001000060006x.

  • Khush, G.S. (1997). Origin, dispersal, cultivation and variation of rice. Plant Mol. Biol., 35 : 25-34.

  • Kover, P.X., Valdar, W., Trakalo, J., Scarcelli, N., Ehrenreich, I.M., Purugganan, M.D., Caroline, Durrant and Richard, Mott (2009). A multiparent advanced generation inter-cross to finemap quantitative traits in Arabidopsis thaliana., PLoS Genet., 5(7): doi.org/10.1371/journal.pgen.1000551.

  • Mackay, I.J. and Powell, W. (2007). The significance and relevance of linkage disequilibrium and association mapping in crops.Trends Plant Sci., 12 : 53.

  • Mackay, I.J., Bansept-Basler, P., Barber, T., Bentley, A.R., Cockram, J., Gosman, N., Greenland, A.J., Horsnell, R., Howells, R., O’Sullivan, D.M., Rose, G.A. and Howell, P.J. (2014).An eight-parent multiparent advanced generation inter-cross population for winter-sown wheat: Creation, properties, and validation, G3: Genes, Genomes, Genet., 4 (9): 1603–1610.

  • Ongom, P.O. and Ejeta, G. (2018). Mating design and genetic structure of a multi-parent advanced generation intercross (MAGIC) population of sorghum [Sorghum bicolor (L.) Moench]. Genomes. Genetics, 8 (1) : 331-341.

  • Pascual, L., Desplat, N., Huang, B.E., Desgroux, A., Bruguier, L., Bouchet, J.P., Le, Q.H., Chauchard, B., Verschave, P. and Causse, M. (2015). Potential of a tomato MAGIC population to decipher the genetic control of quantitative traits and detect causal variants in the resequencing era. Plant Biotechnol. J., 13 : 565–577.

  • Rebetzke, G.J., Verbyla, A.P., Verbyla, K.L., Morell, M.K. and Cavanagh, C.R. (2014). Use of a large multiparent wheat mapping population in genomic dissection of coleoptile and seedling growth. Plant Biotechnol J., 12 (2) : 219–230doi: 10.1111/pbi.12130.

  • Sannemann, W.,Huang, B. E., Mathew, B. and Léon, J. (2015). Multi-parent advanced generation inter-cross in barley: high-resolution quantitative trait locus mapping for flowering time as a proof of concept. Mol. Breed., 35 : 86.

  • Wada, T., Oku, K., Nagano, S., Isobe, S., Suzuki, H., Mori, M., Takata, K.,Hirata, C., Shimomura, K., Tsubone, M., Katayama, T., Hirashima, K.,Uchimura, Y., Ikegami, H., Sueyoshi, T., Obu, K-i., Hayashida, T. and Shibato,Y. (2017). Development and characterization of a strawberry MAGIC population derived from crosses with six strawberry cultivars. Breeding Science, 67 (4): 370–381.doi: 10.1270/jsbbs.17009.

  • https://sites.google.com/site/ijmackay/work/magic.


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  • MAGIC:A Magical Genetic Resource for Multiple Trait Enhancements in Rice

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Authors

Pratibha Bisen
Department of Plant Breeding and Genetics, Jawaharlal Nehru Krishi VishwaVidyalaya, Jabalpur (M.P.), India
Richa Singh
College of Agriculture (J.N.K.V.V.), Balaghat (M.P.), India
Pooja Goswami
College of Agriculture (J.N.K.V.V.), Balaghat (M.P.), India

Abstract


MAGIC is the multi-parent advanced generation inter-cross. It is a simple extension of the advance inter cross. The MAGIC is an alternative resource for the genetic dissection of complex traits. The development of MAGIC population initiated by using the two major ecotypes: indica and japonica. Japonica rice grains are short, roundish, spikelet’s are awnless to long awned and having 0- 20 per cent amylose content in grain. Whereas counterpart indica rice grains are long to short selender grain, awnless spikelets and 23-31 per cent amylose content observed in grain. In rice, developed 4 multi-parent populations: indica MAGIC (8 indica parents); MAGIC plus (8 indica parents with two additional rounds of 8-way F1 inter-crossing); japonica MAGIC (8 japonica parents); and Global MAGIC (16 parents – 8 indica and 8 japonica). The parents used in creating these populations are improved varieties with desirable traits for biotic and abiotic stress tolerance, yield and grain quality. The purpose is to fine map QTLs for multiple traits and to directly and indirectly use the highly recombined lines in breeding programmes.

Keywords


MAGIC (Multi Parent Advanced Generation Inter Cross) , QTL Mapping, Mapping Population.

References